plot.inla {INLA}R Documentation

Default INLA plotting

Description

Takes an inla object produced by inla and plot the results

Usage

## S3 method for class 'inla'
plot(
  x,
  plot.fixed.effects = TRUE,
  plot.lincomb = TRUE,
  plot.random.effects = TRUE,
  plot.hyperparameters = TRUE,
  plot.predictor = TRUE,
  plot.q = TRUE,
  plot.cpo = TRUE,
  plot.prior = FALSE,
  plot.opt.trace = FALSE,
  single = FALSE,
  postscript = FALSE,
  pdf = FALSE,
  prefix = "inla.plots/figure-",
  intern = FALSE,
  debug = FALSE,
  cex = 1.75,
  ...
)

Arguments

x

A fitted inla object produced by inla

plot.fixed.effects

Boolean indicating if posterior marginals for the fixed effects in the model should be plotted

plot.lincomb

Boolean indicating if posterior marginals for the linear combinations should be plotted

plot.random.effects

Boolean indicating if posterior mean and quantiles for the random effects in the model should be plotted

plot.hyperparameters

Boolean indicating if posterior marginals for the hyperparameters in the model should be plotted

plot.predictor

Boolean indicating if posterior mean and quantiles for the linear predictor in the model should be plotted

plot.q

Boolean indicating if precision matrix should be displayed

plot.cpo

Boolean indicating if CPO/PIT values should be plotted

plot.prior

Plot also the prior density for the hyperparameters

plot.opt.trace

Plot optimization trace

single

Boolean indicating if there should be more than one plot per page (FALSE) or just one (TRUE)

postscript

Boolean indicating if postscript files should be produced instead

pdf

Boolean indicating if PDF files should be produced instead

prefix

The prefix for the created files. Additional numbering and suffix is added.

intern

Plot also the hyperparameters in its internal scale.

debug

Write some debug information

cex

The cex parameter in par(). If set to NULL or 0, then default values will be used for graphics parameters

...

Additional arguments to postscript(), pdf() or dev.new().

Value

The return value is a list of the files created (if any).

Author(s)

Havard Rue hrue@r-inla.org

See Also

inla()

Examples


## Not run: 
result = inla(...)
plot(result)
plot(result, single = TRUE, plot.prior = TRUE)
plot(result, single = TRUE, pdf = TRUE, paper = "a4")
   
## End(Not run)
[Package INLA version 25.10.19 Index]