This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdflatex 2026.2.13) 24 FEB 2026 21:16 entering extended mode restricted \write18 enabled. %&-line parsing enabled. **gevit.tex (./gevit.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-02-22> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size11.clo File: size11.clo 2022/07/02 v1.4n Standard LaTeX file (size option) ) \c@part=\count185 \c@section=\count186 \c@subsection=\count187 \c@subsubsection=\count188 \c@paragraph=\count189 \c@subparagraph=\count190 \c@figure=\count191 \c@table=\count192 \abovecaptionskip=\skip48 \belowcaptionskip=\skip49 \bibindent=\dimen140 ) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty Package: geometry 2020/01/02 v5.9 Page Geometry (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty Package: keyval 2022/05/29 v1.15 key=value parser (DPC) \KV@toks@=\toks16 ) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty Package: ifvtex 2019/10/25 v1.7 ifvtex legacy package. Use iftex instead. (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty Package: iftex 2022/02/03 v1.0f TeX engine tests )) \Gm@cnth=\count193 \Gm@cntv=\count194 \c@Gm@tempcnt=\count195 \Gm@bindingoffset=\dimen141 \Gm@wd@mp=\dimen142 \Gm@odd@mp=\dimen143 \Gm@even@mp=\dimen144 \Gm@layoutwidth=\dimen145 \Gm@layoutheight=\dimen146 \Gm@layouthoffset=\dimen147 \Gm@layoutvoffset=\dimen148 \Gm@dimlist=\toks17 ) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty Package: amstext 2021/08/26 v2.01 AMS text (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty File: amsgen.sty 1999/11/30 v2.0 generic functions \@emptytoks=\toks18 \ex@=\dimen149 )) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty \lst@mode=\count196 \lst@gtempboxa=\box51 \lst@token=\toks19 \lst@length=\count197 \lst@currlwidth=\dimen150 \lst@column=\count198 \lst@pos=\count199 \lst@lostspace=\dimen151 \lst@width=\dimen152 \lst@newlines=\count266 \lst@lineno=\count267 \lst@maxwidth=\dimen153 (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty File: lstmisc.sty 2023/02/27 1.9 (Carsten Heinz) \c@lstnumber=\count268 \lst@skipnumbers=\count269 \lst@framebox=\box52 ) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg File: listings.cfg 2023/02/27 1.9 listings configuration )) Package: listings 2023/02/27 1.9 (Carsten Heinz) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty Package: verbatim 2022-07-02 v1.5u LaTeX2e package for verbatim enhancements \every@verbatim=\toks20 \verbatim@line=\toks21 \verbatim@in@stream=\read2 ) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def File: l3backend-pdftex.def 2023-01-16 L3 backend support: PDF output (pdfTeX) \l__color_backend_stack_int=\count270 \l__pdf_internal_box=\box53 ) (./gevit.aux) \openout1 = `gevit.aux'. LaTeX Font Info: Checking defaults for OML/cmm/m/it on input line 6. LaTeX Font Info: ... okay on input line 6. LaTeX Font Info: Checking defaults for OMS/cmsy/m/n on input line 6. LaTeX Font Info: ... okay on input line 6. LaTeX Font Info: Checking defaults for OT1/cmr/m/n on input line 6. LaTeX Font Info: ... okay on input line 6. LaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 6. LaTeX Font Info: ... okay on input line 6. LaTeX Font Info: Checking defaults for TS1/cmr/m/n on input line 6. LaTeX Font Info: ... okay on input line 6. LaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 6. LaTeX Font Info: ... okay on input line 6. LaTeX Font Info: Checking defaults for U/cmr/m/n on input line 6. LaTeX Font Info: ... okay on input line 6. *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * hratio: 1:1 * vratio: 1:1 * modes: includehead includefoot * h-part:(L,W,R)=(59.74988pt, 478.00812pt, 59.74988pt) * v-part:(T,H,B)=(42.25493pt, 760.53699pt, 42.25493pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=478.00812pt * \textheight=693.53699pt * \oddsidemargin=-12.52011pt * \evensidemargin=-12.52011pt * \topmargin=-30.01506pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=11.0pt * \footskip=30.0pt * \marginparwidth=50.0pt * \marginparsep=10.0pt * \columnsep=10.0pt * \skip\footins=10.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) \c@lstlisting=\count271 (../hyper/link/gevit.tex Overfull \hbox (208.672pt too wide) in paragraph at lines 16--17 [][][]\OT1/cmtt/m/n/10.95 function(x, interval = c(REPLACE.ME.low, REPLACE.ME.h igh)) log(-(interval[1] - x) / (interval[2] - x)) [] Overfull \hbox (361.27084pt too wide) in paragraph at lines 17--18 [][][]\OT1/cmtt/m/n/10.95 function(x, interval = c(REPLACE.ME.low, REPLACE.ME.h igh)) interval[1] + (interval[2] - interval[1]) * exp(x) / (1.0 + exp(x)) [] ) (../hyper/link/cgevit.tex Overfull \hbox (208.672pt too wide) in paragraph at lines 16--17 [][][]\OT1/cmtt/m/n/10.95 function(x, interval = c(REPLACE.ME.low, REPLACE.ME.h igh)) log(-(interval[1] - x) / (interval[2] - x)) [] Overfull \hbox (361.27084pt too wide) in paragraph at lines 17--18 [][][]\OT1/cmtt/m/n/10.95 function(x, interval = c(REPLACE.ME.low, REPLACE.ME.h igh)) interval[1] + (interval[2] - interval[1]) * exp(x) / (1.0 + exp(x)) [] [1 {/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]) File: "example-gevit.R" (verbatim) Overfull \hbox (16.37903pt too wide) in paragraph at lines 25--25 [] \OT1/cmtt/m/n/10.95 intercept = list(init ial = 0, param = c(0, 1))))),[] [] [2] Overfull \hbox (68.11722pt too wide) in paragraph at lines 25--25 []\OT1/cmtt/m/n/10.95 ## this shows that the intercept is not part of the linea r predictor, then also, not the fitted[] [] Overfull \hbox (22.12772pt too wide) in paragraph at lines 25--25 [] \OT1/cmtt/m/n/10.95 intercept = list(ini tial = 0, param = c(0, 1))))))[] [] [3] (./gevit.aux) ) Here is how much of TeX's memory you used: 2546 strings out of 477985 40580 string characters out of 5839380 1864388 words of memory out of 6000000 22778 multiletter control sequences out of 15000+600000 514273 words of font info for 39 fonts, out of 8000000 for 9000 14 hyphenation exceptions out of 8191 57i,5n,62p,229b,296s stack positions out of 10000i,1000n,20000p,200000b,200000s Output written on gevit.pdf (3 pages, 64460 bytes). 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